Index

Symbols

--config (required) illumiprocessor command line option --cores (optional; default = 1) illumiprocessor command line option --input (required) illumiprocessor command line option --log-path (optional; default = ./) illumiprocessor command line option --min-len (optional; default = 40) illumiprocessor command line option --no-merge (optional; default = False) illumiprocessor command line option --output (required) illumiprocessor command line option

--phred (optional; default = PHRED33) illumiprocessor command line option --r1-pattern (optional; default = None) illumiprocessor command line option --r2-pattern (optional; default = None) illumiprocessor command line option --se (optional; default = False) illumiprocessor command line option --trimmomatic (optional; default = ~/anaconda/bin/trimmomatic.jar) illumiprocessor command line option --verbosity (optional; default = INFO) illumiprocessor command line option

I

illumiprocessor command line option --config (required) --cores (optional; default = 1) --input (required) --log-path (optional; default = ./) --min-len (optional; default = 40) --no-merge (optional; default = False) --output (required) --phred (optional; default = PHRED33) --r1-pattern (optional; default = None) --r2-pattern (optional; default = None) --se (optional; default = False) --trimmomatic (optional; default = ~/anaconda/bin/trimmomatic.jar) --verbosity (optional; default = INFO)